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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_107569433_107569744_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
107569433 - 107569744
Intron Length:
312

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTTAGTACT
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTCTAATAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCTT
U12 Branch Point Sequence:
TTTTTTCTAATA
Flanking Amino Acid:
GLFDYNSQQQLFQRTNALTV
Intron Amino Acid Position:
264

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.7
0.84
1.1
85.6
30.6
Major BPS
39.5
-0.6
4.3
85.7
34.9
Major PPT
83.9
0.76
0.8
82
28.5
Minor 5ss
34.7
-1.7
2.6
44.5
42.8
Minor BPS
66.6
0.52
1.6
79.19
30.8

Associated Gene:

Gene:
PUM2
Ensembl Gene ID:
ENSAPLG00000010496
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047799
107535541 - 107579958
44418
ENSAPLT00000024396
107535541 - 107579958
44418
ENSAPLT00000011050
107535541 - 107579958
44418
ENSAPLT00000048191
107535541 - 107579958
44418