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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_107570016_107573324_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
107570016 - 107573324
Intron Length:
3309

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAA|GTAAGCTTT
5'SS Class:
strong_major
3'SS Sequence:
TTCTTCTAAACAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAA
U12 Branch Point Sequence:
TTCTTCTAAACA
Flanking Amino Acid:
NGMDADCKDFNRTPGSRQAS
Intron Amino Acid Position:
173

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.2
0.76
1
81.6
33.2
Major BPS
79.5
0.73
0.9
70
36.9
Major PPT
76.7
0.6
0.9
73.9
34.6
Minor 5ss
55.3
0.18
2.7
73.8
36.4
Minor BPS
69.4
0.61
1.6
78.35
38.8

Associated Gene:

Gene:
PUM2
Ensembl Gene ID:
ENSAPLG00000010496
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024396
107535541 - 107579958
44418
ENSAPLT00000011050
107535541 - 107579958
44418
ENSAPLT00000048191
107535541 - 107579958
44418
ENSAPLT00000047799
107535541 - 107579958
44418