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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_107574729_107579889_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
107574729 - 107579889
Intron Length:
5161

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGTATC
5'SS Class:
strong_major
3'SS Sequence:
TCTTTTTAAACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TCTATTTTAAAT
Flanking Amino Acid:
LALESRGMGELLPAKKFWEP
Intron Amino Acid Position:
18

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
98.5
1.14
0.6
94.3
17.7
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
79.7
0.67
0.9
77.5
34.7
Minor 5ss
40.3
-1.1
2.8
54
43.3
Minor BPS
64.5
0.53
1.4
77.18
39.4

Associated Gene:

Gene:
PUM2
Ensembl Gene ID:
ENSAPLG00000010496
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047799
107535541 - 107579958
44418
ENSAPLT00000024396
107535541 - 107579958
44418
ENSAPLT00000011050
107535541 - 107579958
44418
ENSAPLT00000048191
107535541 - 107579958
44418