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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_10760120_10762822_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
10760120 - 10762822
Intron Length:
2703

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGCCGA
5'SS Class:
strong_major
3'SS Sequence:
TTAAATTTGACAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTAAAT
U12 Branch Point Sequence:
TCCCCTTTAAAT
Flanking Amino Acid:
IITAKNIIKQCVVNTVSQIE
Intron Amino Acid Position:
416

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.8
0.87
0.9
68.9
43.8
Major BPS
82.3
0.8
0.9
87.6
25.7
Major PPT
69.6
0.44
1.1
65
45.1
Minor 5ss
37.2
-1.4
3
48
47.5
Minor BPS
64.6
0.54
1.4
74.3
42.6

Associated Gene:

Gene:
VPS54
Ensembl Gene ID:
ENSAPLG00000009734
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010183
10745989 - 10784089
38101