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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_107617449_107618671_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
107617449 - 107618671
Intron Length:
1223

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGTGAG
5'SS Class:
strong_major
3'SS Sequence:
GTCCCTTTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTAAC
U12 Branch Point Sequence:
CTTCTTCTAACA
Flanking Amino Acid:
YVTEELKKPEVTLPRAVMIA
Intron Amino Acid Position:
249

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.5
0.96
0.8
77.5
32.9
Major BPS
84.6
0.86
0.8
83.9
22.3
Major PPT
80.9
0.7
0.8
72.3
37.8
Minor 5ss
26.6
-2.7
3
30.5
43.3
Minor BPS
56.1
0.19
1.7
68.77
37.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000011262
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011730
107616705 - 107625526
8822