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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_107618806_107622662_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
107618806 - 107622662
Intron Length:
3857

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGG|GTGAGCTCT
5'SS Class:
major
3'SS Sequence:
TTTCCCACCTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATGAT
U12 Branch Point Sequence:
TCTTTCCCACCT
Flanking Amino Acid:
LTSGAVAVTWGDKVLGSWAW
Intron Amino Acid Position:
293

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.6
0.63
1
68.4
39.3
Major BPS
84.6
0.86
1
74
41.2
Major PPT
77.3
0.61
0.8
74.6
28.9
Minor 5ss
40.6
-1
3
48.7
47
Minor BPS
47.5
-0.1
2.1
72.26
44.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000011262
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011730
107616705 - 107625526
8822