About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_10764739_10765221_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
10764739 - 10765221
Intron Length:
483

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGACGT
5'SS Class:
strong_major
3'SS Sequence:
TGTTTGATTCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAATAAA
U12 Branch Point Sequence:
TTATGTTTGATT
Flanking Amino Acid:
KFTIFLKRIKATLNTIRSVV
Intron Amino Acid Position:
467

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.6
0.93
0.9
75.5
40.6
Major BPS
70.8
0.52
1
70.6
31.6
Major PPT
79.5
0.66
1
70.4
44.5
Minor 5ss
33.7
-1.9
3.2
48.4
47.1
Minor BPS
61.1
0.43
1.8
79.08
37.7

Associated Gene:

Gene:
VPS54
Ensembl Gene ID:
ENSAPLG00000009734
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010183
10745989 - 10784089
38101