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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_10768123_10768871_F

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
10768123 - 10768871
Intron Length:
749

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATCTGGG
5'SS Class:
major
3'SS Sequence:
TCTTTATAACCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTTAT
U12 Branch Point Sequence:
TTGTCTTTATAA
Flanking Amino Acid:
RFHEERKTKLSLLLDNERWK
Intron Amino Acid Position:
683

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.6
0.51
1.2
59.7
45.2
Major BPS
83.9
0.84
1
73.9
41.3
Major PPT
73.4
0.53
1
67.7
41.8
Minor 5ss
43.7
-0.7
3
58.3
46.4
Minor BPS
61.5
0.36
1.7
72.27
40

Associated Gene:

Gene:
VPS54
Ensembl Gene ID:
ENSAPLG00000009734
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010183
10745989 - 10784089
38101