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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_10770372_10772120_F

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
10770372 - 10772120
Intron Length:
1749

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTAAGATGC
5'SS Class:
strong_major
3'SS Sequence:
TCCTCTCTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTTCAC
U12 Branch Point Sequence:
GATGACATATTT
Flanking Amino Acid:
IVEGQKYATVGTVLLLIRII
Intron Amino Acid Position:
742

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.5
0.72
1
66.9
40
Major BPS
74.9
0.62
1.1
77.4
37.4
Major PPT
85.3
0.79
0.7
80.1
25.2
Minor 5ss
37.8
-1.4
3
42.6
44.5
Minor BPS
43.1
-0.4
2
60.03
43.1

Associated Gene:

Gene:
VPS54
Ensembl Gene ID:
ENSAPLG00000009734
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010183
10745989 - 10784089
38101