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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_10772227_10775356_F

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
10772227 - 10775356
Intron Length:
3130

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGACTC
5'SS Class:
strong_major
3'SS Sequence:
TTTGGTCTTGTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTTTCATTATCT
Flanking Amino Acid:
MLTRLSDLLKYFNSRSCQLV
Intron Amino Acid Position:
778

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.7
0.77
0.9
71.6
38.5
Major BPS
100
1.24
0.5
100
0
Major PPT
79.3
0.66
0.9
73.9
36.8
Minor 5ss
42.6
-0.8
3.1
59.4
45.3
Minor BPS
72.3
0.78
1.8
93.48
34.4

Associated Gene:

Gene:
VPS54
Ensembl Gene ID:
ENSAPLG00000009734
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010183
10745989 - 10784089
38101