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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_107723492_107723952_F

Intron Information:

Intron Rank:
137089
Intron Class:
major
Intron Phase:
Intron Coordinates:
107723492 - 107723952
Intron Length:
461

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTT|GTAAGGGTT
5'SS Class:
major
3'SS Sequence:
TCCTTTCCCCTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATCTCAT
U12 Branch Point Sequence:
TCTTCCCAAACA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.3
0.53
1.1
71.6
38
Major BPS
86.1
0.9
0.7
85.7
22.9
Major PPT
76
0.59
0.7
69.5
31.3
Minor 5ss
37.7
-1.4
3.9
61.3
44.6
Minor BPS
60.1
0.31
2
75.88
41.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000023838
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024421
107723482 - 107725024
1543