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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_107723492_107727325_F

Intron Information:

Intron Rank:
137090
Intron Class:
major
Intron Phase:
Intron Coordinates:
107723492 - 107727325
Intron Length:
3834

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTT|GTAAGGGTT
5'SS Class:
major
3'SS Sequence:
TTATGTATTACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGTTTAT
U12 Branch Point Sequence:
TAAGCTTTAGCA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.3
0.53
1.1
71.6
38
Major BPS
81.3
0.78
1.1
71.7
44.6
Major PPT
79.9
0.67
0.9
73.5
40.5
Minor 5ss
37.7
-1.4
3.9
61.3
44.6
Minor BPS
56.6
0.2
1.7
65.3
41.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000023838
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036487
107723442 - 107728093
4652