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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_10782019_10783983_F

Intron Information:

Intron Rank:
21
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
10782019 - 10783983
Intron Length:
1965

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTGAGTTTG
5'SS Class:
strong_major
3'SS Sequence:
TGTTTCAATGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATCTTAT
U12 Branch Point Sequence:
CTAATCTTATCC
Flanking Amino Acid:
NVVNDGGPQNGLVTSDVAFY
Intron Amino Acid Position:
942

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.8
0.77
0.9
74.8
38.1
Major BPS
82.6
0.81
0.8
71.7
36
Major PPT
76.8
0.6
1
71.3
38.6
Minor 5ss
37.9
-1.4
2.9
40.9
45.3
Minor BPS
55.2
0.14
1.7
63.41
42.1

Associated Gene:

Gene:
VPS54
Ensembl Gene ID:
ENSAPLG00000009734
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010183
10745989 - 10784089
38101