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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_107832146_107843207_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
107832146 - 107843207
Intron Length:
11062

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTACTCATC
5'SS Class:
major
3'SS Sequence:
CTTTTCATTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTTCTTTTCATT
Flanking Amino Acid:
SPEEDTEELLRVEDDLEKLL
Intron Amino Acid Position:
415

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.7
0.51
1.1
69.2
41.7
Major BPS
100
1.24
0.5
100
0
Major PPT
86
0.81
0.8
77.9
35.1
Minor 5ss
42.9
-0.8
3.1
60.9
43.7
Minor BPS
59.7
0.39
1.7
80.3
36.2

Associated Gene:

Gene:
HS1BP3
Ensembl Gene ID:
ENSAPLG00000011418
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011893
107830390 - 107881271
50882