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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_1078619_1100419_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1078619 - 1100419
Intron Length:
21801

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGTGCC
5'SS Class:
strong_major
3'SS Sequence:
CTTTTTTCCCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTGTTAT
U12 Branch Point Sequence:
TTGTTGTTATAG
Flanking Amino Acid:
QGPGNHSQRQNTLTTDDHSP
Intron Amino Acid Position:
41

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.8
0.96
0.8
78.4
29.1
Major BPS
81.3
0.78
1.1
71.7
44.6
Major PPT
87
0.83
0.7
80.6
31.4
Minor 5ss
28.5
-2.5
3
35.5
41.2
Minor BPS
44.8
-0.5
2.3
55.66
45.8

Associated Gene:

Gene:
ISM1
Ensembl Gene ID:
ENSAPLG00000011456
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011931
1078499 - 1118287
39789