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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_107865407_107867646_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
107865407 - 107867646
Intron Length:
2240

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAACTAAA
5'SS Class:
strong_major
3'SS Sequence:
TTGTATTTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTGCAT
U12 Branch Point Sequence:
GCATCCTTAATT
Flanking Amino Acid:
AICPELLEFLGTKSTSVIDF
Intron Amino Acid Position:
245

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.3
0.81
1.1
83.2
30.8
Major BPS
75
0.62
1.4
85.7
34.9
Major PPT
85.8
0.81
0.8
80.8
36.4
Minor 5ss
40.6
-1.1
2.6
50.9
45.5
Minor BPS
78
0.96
1.2
81.66
39.9

Associated Gene:

Gene:
HS1BP3
Ensembl Gene ID:
ENSAPLG00000011418
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011893
107830390 - 107881271
50882