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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_10787385_10787768_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
10787385 - 10787768
Intron Length:
384

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAACTCC
5'SS Class:
major
3'SS Sequence:
TTCCCTTCAAAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTAAA
U12 Branch Point Sequence:
TTCCCTTCAAAA
Flanking Amino Acid:
LVKLGSSFTKVQDYLRRFES
Intron Amino Acid Position:
438

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.6
0.7
1
69.1
36.7
Major BPS
81.6
0.78
0.8
82
24.9
Major PPT
65.4
0.35
1
67.8
31.2
Minor 5ss
44.5
-0.6
2.9
60
44.7
Minor BPS
54.8
0.15
1.7
66.41
39.8

Associated Gene:

Gene:
UGP2
Ensembl Gene ID:
ENSAPLG00000009870
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044737
10786272 - 10810890
24619
ENSAPLT00000010306
10786272 - 10810890
24619