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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_107876591_107880912_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
107876591 - 107880912
Intron Length:
4322

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACCGGTG
5'SS Class:
major
3'SS Sequence:
TTTTTCTCCCTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
GATGCCTGAACT
Flanking Amino Acid:
GPAPAALVTTRQIQNKHTGL
Intron Amino Acid Position:
120

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
66.4
0.39
1.3
58.9
46
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
83.8
0.76
0.7
78
30.8
Minor 5ss
37.3
-1.4
3.8
55.1
49.1
Minor BPS
66.7
0.6
1.6
79.35
42

Associated Gene:

Gene:
HS1BP3
Ensembl Gene ID:
ENSAPLG00000011418
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011893
107830390 - 107881271
50882