Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_107912621_107929753_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

107912621 - 107929753

Intron Length:

17133

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAATTACA

5'SS Class:

strong_major

3'SS Sequence:

CTTTAATTTCTAG|C

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTTCAA

U12 Branch Point Sequence:

TATGCTTTAATT

Flanking Amino Acid:

STTIKQNLKKLIFYYGTGDS

Intron Amino Acid Position:

275

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

86.8

0.87

0.9

82.6

29.6

Major BPS

90.8

1.01

0.7

91.9

19.6

Major PPT

78.6

0.64

0.8

70.3

Minor 5ss

36.1

-1.6

2.6

Minor BPS

0.86

1.3

84.68

36.4

Associated Gene:

Gene:

LDAH

Ensembl Gene ID:

ENSAPLG00000011591

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000041458

107912429 - 108030215

117787

ENSAPLT00000012092

107912429 - 108030833

118405