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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_10792401_10793502_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
10792401 - 10793502
Intron Length:
1102

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTATGTGTT
5'SS Class:
strong_major
3'SS Sequence:
TTGCTTCTTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTGAA
U12 Branch Point Sequence:
ACTTTCTGAAAA
Flanking Amino Acid:
KQTQTSEKDLIQPYEKIKAR
Intron Amino Acid Position:
109

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.5
0.77
0.9
79.7
33.4
Major BPS
82.1
0.8
0.8
71.6
36.4
Major PPT
85.6
0.8
0.8
80.1
32
Minor 5ss
44.9
-0.6
3.2
63.2
43.8
Minor BPS
59.7
0.3
1.5
67.67
38.4

Associated Gene:

Gene:
UGP2
Ensembl Gene ID:
ENSAPLG00000009870
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044737
10786272 - 10810890
24619