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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_10792401_10804680_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
10792401 - 10804680
Intron Length:
12280

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCT|GTAAGTTGC
5'SS Class:
major
3'SS Sequence:
TTGCTTCTTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTGAA
U12 Branch Point Sequence:
ACTTTCTGAAAA
Flanking Amino Acid:
GKIQRPPEDSIQPYEKIKAR
Intron Amino Acid Position:
85

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.8
0.56
1.1
66.5
40.1
Major BPS
82.1
0.8
0.8
71.6
36.4
Major PPT
85.6
0.8
0.8
80.1
32
Minor 5ss
43.5
-0.7
2.8
62.6
42
Minor BPS
59.7
0.3
1.5
67.67
38.4

Associated Gene:

Gene:
UGP2
Ensembl Gene ID:
ENSAPLG00000009870
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010306
10786272 - 10810890
24619