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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_107929837_107950346_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
107929837 - 107950346
Intron Length:
20510

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTGAGTGCA
5'SS Class:
strong_major
3'SS Sequence:
TCTTCCTTTACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTACAT
U12 Branch Point Sequence:
TCTTCCTTTACA
Flanking Amino Acid:
SVNLFSVDCIANILYMASQE
Intron Amino Acid Position:
247

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.4
0.79
0.9
72.9
31.3
Major BPS
73.9
0.59
1
81
30.2
Major PPT
89.1
0.88
0.6
83.6
24.8
Minor 5ss
27.7
-2.6
3
29.3
37
Minor BPS
77.4
0.86
1.5
83.52
37

Associated Gene:

Gene:
LDAH
Ensembl Gene ID:
ENSAPLG00000011591
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041458
107912429 - 108030215
117787
ENSAPLT00000012092
107912429 - 108030833
118405