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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_107998399_108017395_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
107998399 - 108017395
Intron Length:
18997

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGGGTC
5'SS Class:
strong_major
3'SS Sequence:
TTTCTTTTGACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTGAC
U12 Branch Point Sequence:
TTTCTTTTGACA
Flanking Amino Acid:
LPRLLFMIIPGNPGLAGYYR
Intron Amino Acid Position:
65

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.8
0.77
0.9
74.2
36.3
Major BPS
78.7
0.71
0.9
69.3
37.7
Major PPT
85.5
0.8
0.9
83.5
31.6
Minor 5ss
33.9
-1.8
3.7
46.6
43.5
Minor BPS
71.5
0.67
1.1
79.17
30

Associated Gene:

Gene:
LDAH
Ensembl Gene ID:
ENSAPLG00000011591
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041458
107912429 - 108030215
117787
ENSAPLT00000012092
107912429 - 108030833
118405