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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_10804789_10805375_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
10804789 - 10805375
Intron Length:
587

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGAAGT
5'SS Class:
strong_major
3'SS Sequence:
TTCTTCTCTGTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTAAT
U12 Branch Point Sequence:
TATTAATGAATA
Flanking Amino Acid:
LATAPSNELEHTKNDLEGFK
Intron Amino Acid Position:
49

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.3
1
0.8
84.6
33.3
Major BPS
91.8
1.04
0.7
90.2
19.3
Major PPT
85
0.79
0.6
81.4
23.7
Minor 5ss
35.2
-1.7
3
49.5
46.3
Minor BPS
51.3
0.04
1.9
68.31
37.3

Associated Gene:

Gene:
UGP2
Ensembl Gene ID:
ENSAPLG00000009870
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044737
10786272 - 10810890
24619
ENSAPLT00000010306
10786272 - 10810890
24619