About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_108171828_108173785_F

Intron Information:

Intron Rank:
150657
Intron Class:
major
Intron Phase:
Intron Coordinates:
108171828 - 108173785
Intron Length:
1958

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATCACT
5'SS Class:
strong_major
3'SS Sequence:
CATTTCTTCACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTTTCCTTAACT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81
0.73
1
77.3
37.6
Major BPS
100
1.24
0.5
100
0
Major PPT
81.5
0.71
0.8
75.9
32.3
Minor 5ss
42.1
-0.9
2.9
59.1
45
Minor BPS
100
1.65
0.3
108.3
8.33

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000030946
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033104
108161413 - 108174361
12949