Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_108216326_108217143_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

108216326 - 108217143

Intron Length:

818

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

ATG|GTAAGATAT

5'SS Class:

strong_major

3'SS Sequence:

ATCTGTTTCACAG|C

3'SS Class:

major_PPT

U2 Branch Point Sequence:

ATTTGAA

U12 Branch Point Sequence:

TTTGGTAAAACA

Flanking Amino Acid:

TLLFLEYDLNAVSNYKYEGD

Intron Amino Acid Position:

3858

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

85.3

0.83

0.9

79.5

29.4

Major BPS

78.4

0.71

0.9

69.4

37.7

Major PPT

77.9

0.63

0.9

71.9

37.5

Minor 5ss

39.8

-1.1

3.2

53.2

Minor BPS

-0.4

2.3

63.36

43.5

Associated Gene:

Gene:

APOB

Ensembl Gene ID:

ENSAPLG00000011670

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000012258

108212231 - 108249054

36824