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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_108224722_108225810_R

Intron Information:

Intron Rank:
23
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
108224722 - 108225810
Intron Length:
1089

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGAGTG
5'SS Class:
strong_major
3'SS Sequence:
TTTCCTATTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTACAT
U12 Branch Point Sequence:
TTTTTCCTATTT
Flanking Amino Acid:
VFELLSYNVKGSGEASYNRN
Intron Amino Acid Position:
1332

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91
0.97
0.8
78.9
35.3
Major BPS
73.9
0.59
1
81
30.2
Major PPT
87.5
0.84
0.7
85.5
27.4
Minor 5ss
34
-1.8
3.5
46.6
48.7
Minor BPS
60.1
0.4
1.9
84.08
37

Associated Gene:

Gene:
APOB
Ensembl Gene ID:
ENSAPLG00000011670
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012258
108212231 - 108249054
36824