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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_108226188_108228674_R

Intron Information:

Intron Rank:
22
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
108226188 - 108228674
Intron Length:
2487

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGGTAGA
5'SS Class:
strong_major
3'SS Sequence:
TTTTATTTTCTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAC
U12 Branch Point Sequence:
CAGCTTTTAACA
Flanking Amino Acid:
ITIPEELFLKSEGRIKYIFN
Intron Amino Acid Position:
1206

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.4
0.86
0.9
78
38.6
Major BPS
89.7
0.98
0.7
89.9
20
Major PPT
87.9
0.85
0.7
81.4
35.9
Minor 5ss
33.7
-1.9
3
42.3
44.5
Minor BPS
59.9
0.31
1.3
61.06
39.3

Associated Gene:

Gene:
APOB
Ensembl Gene ID:
ENSAPLG00000011670
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012258
108212231 - 108249054
36824