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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_108228821_108229099_R

Intron Information:

Intron Rank:
21
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
108228821 - 108229099
Intron Length:
279

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTATGTTTC
5'SS Class:
strong_major
3'SS Sequence:
CTCCTCATTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTCAT
U12 Branch Point Sequence:
TTTGTTTTACTT
Flanking Amino Acid:
MRHIVSQFIVATNTWLQKAS
Intron Amino Acid Position:
1158

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.8
0.75
0.9
76.7
32.9
Major BPS
82.3
0.8
0.9
81.8
30.8
Major PPT
79.2
0.66
0.8
73.2
30.1
Minor 5ss
53.6
0.12
2.3
66.5
39.1
Minor BPS
59.5
0.38
1.7
78.3
39.3

Associated Gene:

Gene:
APOB
Ensembl Gene ID:
ENSAPLG00000011670
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012258
108212231 - 108249054
36824