About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_108229593_108230902_R

Intron Information:

Intron Rank:
19
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
108229593 - 108230902
Intron Length:
1310

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAACTCAG
5'SS Class:
strong_major
3'SS Sequence:
TTTGCTTTCACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TTTGCTTTCACA
Flanking Amino Acid:
ISEVTLTGQIRYAGMEEAML
Intron Amino Acid Position:
1036

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80
0.71
1.1
68.8
43.8
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
84.6
0.78
0.8
79.7
32.4
Minor 5ss
39.1
-1.2
2.9
49.5
46.7
Minor BPS
65
0.46
1.8
78.6
38.6

Associated Gene:

Gene:
APOB
Ensembl Gene ID:
ENSAPLG00000011670
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012258
108212231 - 108249054
36824