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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_108231908_108232126_R

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
108231908 - 108232126
Intron Length:
219

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGAAAA
5'SS Class:
strong_major
3'SS Sequence:
ACTCCTTCTTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTACAA
U12 Branch Point Sequence:
TAGTTATTTACA
Flanking Amino Acid:
APYYPLTGETRYEVEIVSTG
Intron Amino Acid Position:
925

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.9
1.01
0.7
86
23.7
Major BPS
73.5
0.59
1
81.3
29.9
Major PPT
76.2
0.59
0.8
73.9
30.4
Minor 5ss
32.8
-2
2.9
39.7
45.8
Minor BPS
50.9
0.02
1.9
65.15
41.2

Associated Gene:

Gene:
APOB
Ensembl Gene ID:
ENSAPLG00000011670
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012258
108212231 - 108249054
36824