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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_108232310_108232567_R

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
108232310 - 108232567
Intron Length:
258

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATGGGA
5'SS Class:
major
3'SS Sequence:
TTTCCTGTTCTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATAAAT
U12 Branch Point Sequence:
CTGGGAATAAAT
Flanking Amino Acid:
PKTPTKLLSISNTLHLVSPT
Intron Amino Acid Position:
864

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.2
0.66
1
65.9
39.8
Major BPS
65.7
0.39
1
71.3
30.3
Major PPT
80.4
0.68
0.8
73.3
37.1
Minor 5ss
28.7
-2.4
3.5
38.6
46.4
Minor BPS
38.6
-0.7
2.2
54.94
46.4

Associated Gene:

Gene:
APOB
Ensembl Gene ID:
ENSAPLG00000011670
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012258
108212231 - 108249054
36824