About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_108232780_108233983_R

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
108232780 - 108233983
Intron Length:
1204

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGT|GTAAGTCTC
5'SS Class:
major
3'SS Sequence:
TTTTATTAAATAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATTAA
U12 Branch Point Sequence:
GTTTTATTAAAT
Flanking Amino Acid:
KVAVKLHQKSMQAELIAKPS
Intron Amino Acid Position:
794

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.2
0.57
1.1
69.1
41.9
Major BPS
75.5
0.63
1
66.3
40.4
Major PPT
73.2
0.52
1
71
38.6
Minor 5ss
40.8
-1
3
54.6
42.6
Minor BPS
65.7
0.57
1.7
83.28
36.9

Associated Gene:

Gene:
APOB
Ensembl Gene ID:
ENSAPLG00000011670
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012258
108212231 - 108249054
36824