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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_108239715_108240449_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
108239715 - 108240449
Intron Length:
735

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTACAACTG
5'SS Class:
major
3'SS Sequence:
TTTTCATTGATAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTTTCATTGATA
Flanking Amino Acid:
PKINNRNFDGDELEEKGLAL
Intron Amino Acid Position:
281

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.7
0.49
1.1
59.9
44.8
Major BPS
100
1.24
0.5
100
0
Major PPT
76.1
0.59
0.9
73.5
36.1
Minor 5ss
33.9
-1.8
3.5
47.5
47.9
Minor BPS
72.8
0.71
1.5
83.67
29.7

Associated Gene:

Gene:
APOB
Ensembl Gene ID:
ENSAPLG00000011670
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012258
108212231 - 108249054
36824