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Intron Name: Anas_platyrhynchos_platyrhynchos_3_108240848_108241854_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

108240848 - 108241854

Intron Length:

1007

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CTA|GTAAGTATA

5'SS Class:

strong_major

3'SS Sequence:

GTTTATTTTACAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

ATATTAT

U12 Branch Point Sequence:

TATTCAGTAAAA

Flanking Amino Acid:

VSPIAVVKGLNIPLSTLLSS

Intron Amino Acid Position:

211

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

80.9

0.73

0.9

82.6

29.6

Major BPS

75.9

0.64

66.1

40.5

Major PPT

86.2

0.82

0.8

80.1

37.1

Minor 5ss

41.2

-1

2.8

Minor BPS

49.9

-0

2.3

71.45

39.9

Associated Gene:

Gene:

APOB

Ensembl Gene ID:

ENSAPLG00000011670

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000012258

108212231 - 108249054

36824