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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_108242011_108242195_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
108242011 - 108242195
Intron Length:
185

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGTGTT
5'SS Class:
strong_major
3'SS Sequence:
TCCTTCTCTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACCAAT
U12 Branch Point Sequence:
ACAGCATGAATT
Flanking Amino Acid:
TVENVKTISMDTVYGKCDTE
Intron Amino Acid Position:
159

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.6
0.96
0.8
87
27.7
Major BPS
64.1
0.35
1.2
71
33.2
Major PPT
84.5
0.78
0.7
76.7
32
Minor 5ss
38.8
-1.3
3.4
55
43.6
Minor BPS
47.4
-0.1
1.8
61.33
42.4

Associated Gene:

Gene:
APOB
Ensembl Gene ID:
ENSAPLG00000011670
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012258
108212231 - 108249054
36824