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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_108243608_108244501_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
108243608 - 108244501
Intron Length:
894

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGGAAA
5'SS Class:
strong_major
3'SS Sequence:
TTTGTGTTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAATGAA
U12 Branch Point Sequence:
AACAGATAAACA
Flanking Amino Acid:
SRSGSKITCKVELEVPQLCH
Intron Amino Acid Position:
59

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.6
0.98
0.8
84
28.8
Major BPS
67.7
0.44
1
58
38.9
Major PPT
87
0.83
0.8
84.6
36
Minor 5ss
31.6
-2.1
3.1
39
46.4
Minor BPS
40.8
-0.7
2.1
48.78
41.4

Associated Gene:

Gene:
APOB
Ensembl Gene ID:
ENSAPLG00000011670
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012258
108212231 - 108249054
36824