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Intron Name: Anas_platyrhynchos_platyrhynchos_3_108244618_108248996_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

108244618 - 108248996

Intron Length:

4379

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAC|GTAAGTACT

5'SS Class:

strong_major

3'SS Sequence:

TTCCTAATTGCAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TCCTAAT

U12 Branch Point Sequence:

GTTTTCCTAATT

Flanking Amino Acid:

LLLLSSGVLTQDATRFKHLR

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

81.3

0.74

1.2

84.4

33.5

Major BPS

81.9

0.79

0.9

80.1

Major PPT

0.68

0.9

74.2

34.1

Minor 5ss

39.8

-1.1

2.8

52.2

37.4

Minor BPS

68.6

0.66

1.6

85.16

Associated Gene:

Gene:

APOB

Ensembl Gene ID:

ENSAPLG00000011670

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000012258

108212231 - 108249054

36824