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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_108325747_108334691_F

Intron Information:

Intron Rank:
137779
Intron Class:
major
Intron Phase:
Intron Coordinates:
108325747 - 108334691
Intron Length:
8945

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATTTGCC
5'SS Class:
major
3'SS Sequence:
TTCATTCCCCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
GTTTTTTTCATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.7
0.63
1
67.8
35.6
Major BPS
100
1.24
0.5
100
0
Major PPT
77.5
0.62
0.8
69.6
36.6
Minor 5ss
40.1
-1.1
3
53.8
43.5
Minor BPS
61.6
0.45
1.7
79.54
37.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000024198
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039001
108325604 - 108335336
9733
ENSAPLT00000036389
108325713 - 108335336
9624