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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_10839228_10839793_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
10839228 - 10839793
Intron Length:
566

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAACTTGT
5'SS Class:
strong_major
3'SS Sequence:
TTTCCCCAAACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTCAT
U12 Branch Point Sequence:
TTTTCCCCAAAC
Flanking Amino Acid:
LLYSFPVVIKDKTWKFVEGL
Intron Amino Acid Position:
294

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.9
0.78
1.1
78.8
38.3
Major BPS
94.9
1.12
0.6
93.9
14.7
Major PPT
71.3
0.48
0.9
67
33
Minor 5ss
47.5
-0.2
2.6
67.8
43
Minor BPS
58.3
0.24
2
77.36
37.8

Associated Gene:

Gene:
MDH1
Ensembl Gene ID:
ENSAPLG00000009983
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010427
10839080 - 10850036
10957