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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_10840198_10841648_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
10840198 - 10841648
Intron Length:
1451

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGATCT
5'SS Class:
strong_major
3'SS Sequence:
TTCTTAATTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATAAT
U12 Branch Point Sequence:
ATTTTCTTAATT
Flanking Amino Acid:
DSWLKGDFILTVQQRGAAVI
Intron Amino Acid Position:
226

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.5
0.81
0.9
76.9
32.3
Major BPS
87.8
0.94
0.9
86.6
28.1
Major PPT
83.6
0.76
0.8
78.2
33.8
Minor 5ss
40.7
-1
3.1
54.8
43.3
Minor BPS
85.7
1.2
0.9
93.91
26.5

Associated Gene:

Gene:
MDH1
Ensembl Gene ID:
ENSAPLG00000009983
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010427
10839080 - 10850036
10957