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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_10841826_10841956_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
10841826 - 10841956
Intron Length:
131

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAAAGAA
5'SS Class:
strong_major
3'SS Sequence:
AATTTCCAATTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTAAT
U12 Branch Point Sequence:
ACATCTCTAATT
Flanking Amino Acid:
RLDHNRAKSQIALKLGVTSN
Intron Amino Acid Position:
167

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.9
0.75
0.9
73.7
30.1
Major BPS
82.2
0.8
0.9
81.6
27
Major PPT
62.7
0.29
1
61.7
39.3
Minor 5ss
29.1
-2.4
3.4
37.8
47
Minor BPS
58.4
0.34
1.6
71.68
39.6

Associated Gene:

Gene:
MDH1
Ensembl Gene ID:
ENSAPLG00000009983
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010427
10839080 - 10850036
10957