About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_10844694_10845024_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
10844694 - 10845024
Intron Length:
331

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAATGTC
5'SS Class:
strong_major
3'SS Sequence:
TGTTCCTTTACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTCAA
U12 Branch Point Sequence:
TGTTCCTTTACA
Flanking Amino Acid:
AKGDVFGKEQPLVLVLLDIT
Intron Amino Acid Position:
35

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.5
0.88
0.9
82
29.3
Major BPS
83
0.82
0.8
83.9
25.3
Major PPT
86.3
0.82
0.8
80.2
31.9
Minor 5ss
36.6
-1.5
3.4
52
45.2
Minor BPS
77.7
0.87
1.5
84.68
34.6

Associated Gene:

Gene:
MDH1
Ensembl Gene ID:
ENSAPLG00000009983
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010427
10839080 - 10850036
10957