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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_108652714_108654497_R

Intron Information:

Intron Rank:
155564
Intron Class:
major
Intron Phase:
Intron Coordinates:
108652714 - 108654497
Intron Length:
1784

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTGAGTTTT
5'SS Class:
strong_major
3'SS Sequence:
GATCTTTATCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTTAT
U12 Branch Point Sequence:
TGATCTTTATCC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87
0.87
0.8
85.7
25.5
Major BPS
83.9
0.84
1
73.9
41.3
Major PPT
74.6
0.55
1
66.2
44.1
Minor 5ss
40.8
-1
3
55
43.6
Minor BPS
65.4
0.46
1.6
72
39

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000031200
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044350
108649468 - 108654717
5250