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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_10895948_10897438_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
10895948 - 10897438
Intron Length:
1491

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGCTGT
5'SS Class:
strong_major
3'SS Sequence:
TTCAATTGTACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTCAA
U12 Branch Point Sequence:
ACATCCATAATT
Flanking Amino Acid:
WSLKTTLHIREEDIGIHQYY
Intron Amino Acid Position:
21

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.4
0.84
0.9
74.8
38.1
Major BPS
83
0.82
0.8
83.9
25.3
Major PPT
74
0.54
1
68.2
41.9
Minor 5ss
40.1
-1.1
3.1
55.9
48.3
Minor BPS
64.6
0.54
1.6
76.36
40.2

Associated Gene:

Gene:
WDPCP
Ensembl Gene ID:
ENSAPLG00000010025
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010436
10878452 - 10984224
105773