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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_10897484_10898479_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
10897484 - 10898479
Intron Length:
996

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAAATAT
5'SS Class:
strong_major
3'SS Sequence:
TTCTTTCCTCTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTAACATTCACC
Flanking Amino Acid:
IHQYYDKKEPALQMKHGYLE
Intron Amino Acid Position:
36

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.7
0.79
0.9
80.1
28.2
Major BPS
100
1.24
0.5
100
0
Major PPT
84.3
0.77
0.7
77.9
31
Minor 5ss
39
-1.2
3.2
55.7
48.5
Minor BPS
52.3
0.05
2.1
69.59
41.2

Associated Gene:

Gene:
WDPCP
Ensembl Gene ID:
ENSAPLG00000010025
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010436
10878452 - 10984224
105773