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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_10901280_10910594_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
10901280 - 10910594
Intron Length:
9315

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAAATGT
5'SS Class:
strong_major
3'SS Sequence:
TTTTTGGATTTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTGAT
U12 Branch Point Sequence:
GCTTTTTGGATT
Flanking Amino Acid:
SKWRNKRICQLLFHSGILVS
Intron Amino Acid Position:
97

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.1
0.76
0.9
74.9
36.1
Major BPS
91.3
1.03
0.7
79.6
35.6
Major PPT
75.4
0.57
1
74.3
40.6
Minor 5ss
39
-1.2
3.2
56.6
47.5
Minor BPS
52.3
0.15
1.4
67.14
38.3

Associated Gene:

Gene:
WDPCP
Ensembl Gene ID:
ENSAPLG00000010025
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010436
10878452 - 10984224
105773