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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_10910710_10914179_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
10910710 - 10914179
Intron Length:
3470

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAATTACA
5'SS Class:
major
3'SS Sequence:
ATTTTTTTTCCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTATTAC
U12 Branch Point Sequence:
ACAGTCGTGACT
Flanking Amino Acid:
GKLISDTISDAVLADNFIIL
Intron Amino Acid Position:
135

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79
0.68
1
75.3
34
Major BPS
57.1
0.18
1.3
51.8
43.6
Major PPT
92.1
0.95
0.7
85.1
34.9
Minor 5ss
36.2
-1.6
2.6
40.8
40
Minor BPS
45.9
-0.2
2.1
60.84
43.4

Associated Gene:

Gene:
WDPCP
Ensembl Gene ID:
ENSAPLG00000010025
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010436
10878452 - 10984224
105773