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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_10914314_10918784_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
10914314 - 10918784
Intron Length:
4471

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATAGCTG
5'SS Class:
major
3'SS Sequence:
TTTCTTCCATCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAAATAT
U12 Branch Point Sequence:
TTTTCTTCCATC
Flanking Amino Acid:
LEKLSCLDFKISYIDIPGPE
Intron Amino Acid Position:
180

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.9
0.49
1.1
59.4
45
Major BPS
59.7
0.24
1.1
55.7
39.9
Major PPT
82.6
0.73
0.8
82.7
27.5
Minor 5ss
39.8
-1.1
3.4
55.3
48.9
Minor BPS
56.6
0.19
1.9
74.09
37.4

Associated Gene:

Gene:
WDPCP
Ensembl Gene ID:
ENSAPLG00000010025
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010436
10878452 - 10984224
105773