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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_109166252_109222255_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
109166252 - 109222255
Intron Length:
56004

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGAAAT
5'SS Class:
strong_major
3'SS Sequence:
TTCAATCTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAA
U12 Branch Point Sequence:
TGCTTTTCAATC
Flanking Amino Acid:
HLCLPETIVKARSRVPFEKQ
Intron Amino Acid Position:
12

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.6
0.93
0.8
85.9
23.9
Major BPS
90.8
1.01
0.7
91.9
19.6
Major PPT
80.6
0.69
0.9
77.2
36.6
Minor 5ss
29.7
-2.3
3
39.4
46.1
Minor BPS
55.5
0.15
1.5
62.32
37.9

Associated Gene:

Gene:
KLHL29
Ensembl Gene ID:
ENSAPLG00000012405
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012913
109166131 - 109463043
296913